Communications Earth & Environment
○ Springer Science and Business Media LLC
Preprints posted in the last 90 days, ranked by how well they match Communications Earth & Environment's content profile, based on 14 papers previously published here. The average preprint has a 0.01% match score for this journal, so anything above that is already an above-average fit.
Liao, M.; Li, P.; Hao, Z.; Zhang, X.; Cui, K.; Wang, Y.; Liu, X.; Zhang, E.; Ni, J.; Li, K.
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The accelerating global climate change has been triggering large-scale vegetation reorganizations, yet our understanding of how mountain ecosystems respond to rapid climatic oscillations is critically constrained. Here, we present a high-resolution palynological record from Erhai Lake, southwestern China, revealing eight episodes of rapid vegetation reorganizations in the Hengduan Mountains (HMs) over the past 35,200 years. These reorganizations closely tracked the rhythms of rapid climate oscillations, particularly during the Last Glacial Maximum and the Last Deglacial Period. We find that while the timing of rapid vegetation reorganizations were synchronous with Atlantic Meridional Overturning Circulation (AMOC) anomalies that modulated global climate variability, the magnitude of these reorganizations did not exhibit a linear correlation with AMOC strength; instead, they were governed by local heat and moisture availability mediated through teleconnections. This demonstrates a strong natural regulatory capacity of mountain vegetation in HMs, enabling resilience to intense climatic fluctuations. However, when using the Erhai record as a benchmark, we project that rapid reorganizations under the high-emission pathway (SSP585) will likely surpass the intensities observed during historical events. These findings reveal the high climatic sensitivity and strong natural regulatory capacity of mountain ecosystems, highlighting the critical necessity of climate mitigation actions and nature-based solutions to safeguard subalpine and alpine biodiversity against unprecedented future climate change.
Joyce, L.; Lapham, L. L.; MacLeod, R.; Phillips, M. R.; Norooz Oliaee, J.; Gillespie, A. W.; Morse, P.; Dallimore, S.; Goordial, J.
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The Arctic is warming rapidly, causing permafrost thaw and accelerating the release of greenhouse gases. Rapid thaw features such as retrogressive thaw slumps are increasing in frequency and severity across the Arctic; however, their associated greenhouse gas emissions are poorly constrained. Current estimates of emissions from retrogressive thaw slumps rely largely on laboratory incubations and carbon stock estimates rather than in-situ field measurements. Here we directly quantify methane and carbon dioxide fluxes from the exposed headwall of an active retrogressive thaw slump. We show that thaw immediately releases biogenic methane and carbon dioxide, originating from gases trapped within the frozen soil matrix. Microbial transcription of methyl-coenzyme M reductase suggests archaea carrying out methanogenesis at subzero temperatures are the source of trapped methane. Carbon emissions varied by an order of magnitude among cryostratigraphic units, reflecting differences in geomorphologic history, organic carbon and nitrogen content, and microbial community composition. Carbon emissions were highest from organic-rich paleo cryosols from the Late Holocene that contained abundant methanogenic archaea. We estimate that [~]300 kg C (CO2 equivalents) is emitted annually from the headwall of this small thaw slump (surface area of [~]1200 m2). Considering the thousands of active slumps and extensive coastal permafrost erosion across the northern continuous permafrost zone, such features may represent a growing natural source of GHG emissions. These findings indicate that current permafrost carbon feedback models underestimate GHG release by omitting the direct release of trapped gases stored in permafrost.
ZHU, D.; Rashid, I.; Walter, K.; Tong, S.; Bhattarai, N.; Zou, X.; Joshi, S.; Kuhn, M.; Liu, J.; Jiang, H.; Chen, H.; Wu, N.
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Accurate accounting of aquatic methane emissions is critical for climate change mitigation, yet current global budgets overlook a key driver: the elevation-regulated atmospheric pressure. Here, we present the first large-scale investigation of methane ebullition across 164 shallow waters spanning elevations from sea level to 4886 meters. We demonstrate that ebullition rate increases with elevation-over four times higher at >3000 m a.s.l. than at sea level-due to two synergistic, pressure-dependent physical mechanisms: a degas effect (enhanced bubble formation) and a trigger effect (facilitated bubble ascent). Independent theoretical prediction of the combined effects shows near-perfect agreement with the empirical elevation trend, quantitatively confirming that these physical mechanisms are the primary drivers of enhanced ebullition at high elevations. Our findings reveal that mountain aquatic ecosystems represent unaccounted methane hotspots that have been systematically underestimated in global inventories.We therefore call for urgent integration of these ecosystems into IPCC assessments and targeted mountain mitigation and sustainable management strategies.
Ahrends, A.; Harrison, S. B.; Hollingsworth, P. M.; Heath, J. D. J.; Wang, Y.; Xu, J.; Green, J. M. H.
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Commodity maps and the ability to monitor commodity-driven deforestation are essential for sustainability risk assessment and due diligence. Natural rubber (Hevea brasiliensis), used primarily in tyres, remains challenging to map because of its similarity to other tree cover. Integrating optical and radar satellite data, we produced a 10 m map of rubber distribution in Southeast Asia for around 2020 and assessed this map and similar products for deforestation due diligence. In continental Southeast Asia, estimated users accuracy was 0.95 and area-adjusted producers accuracy 0.78. Rubber-associated clearances of natural and semi-natural tree cover during 2011-2016 were estimated at 0.3-0.4 Mha, predominantly associated with industrial-scale plantations and concentrated in Cambodia. Historical clearances were less certain, with plausible bounds of 1.3-3.0 Mha since 1990. Evaluation of rubber and forest maps highlighted persistent limitations, particularly in insular Southeast Asia and smallholder systems. Accounting for these limitations is critical for fair and effective due diligence.
Mackelprang, R.; Snyder, M. W.; Barnett, S. E.; Kellerman, A. M.; Starr, S. F.; Arzoumanian, S.; Maroutian, M.; Corpeno, J. A.; Douglas, T. A.; Shade, A.; Spencer, R. G.
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Permafrost thaw exposes ancient organic matter to microbial degradation, which is predicted to release globally significant quantities of greenhouse gases into the atmosphere. Though microorganisms drive these processes, the relative importance of biotic (taxonomic and functional community composition) versus environmental (e.g., soil physicochemistry) drivers and their interactions are unknown. Using a novel in situ thaw experiment conducted at the Cold Regions Research and Engineering Laboratorys Permafrost Tunnel near Fairbanks, Alaska, we experimentally separated the effects of soil physicochemistry and microbial communities under "real-world" thaw conditions. To simulate thaw, active layer soil, Holocene permafrost (2 kya), and Pleistocene permafrost (40 kya) were sterilized, inoculated with microbial communities from the different soils, enclosed in 0.22 {micro}m membrane bags to prevent immigration, and buried in the active layer. We retrieved the bags after two weeks and two months of thaw and characterized microbial community structure (16S rRNA and ITS2 amplicon sequencing), functional potential (metagenome sequencing), and soil organic matter (OM) composition at the molecular level (FT-ICR MS). Soil had a stronger effect on bacterial community and gene assemblages than inoculum, and the effects of inoculum were stronger and longer-lasting on community structure than functional potential. Pleistocene permafrost initially contained approximately eleven times more dissolved organic carbon than the other soils, and was enriched in OM derived from microbial necromass and low molecular weight organic acids. This carbon was rapidly depleted during thaw and OM compositional characteristics became increasingly similar to active layer and Holocene permafrost, paralleling shifts in Pleistocene permafrost functional gene profiles and bacterial community structure towards those of other soils. Overall, this work provides new insights into the susceptibility of OM to microbial degradation in compositionally distinct permafrost soils, and ways in which Pleistocene Yedoma permafrost carbon is likely to be particularly vulnerable to permafrost thaw.
Sheldon, D.; Winner, K.; Deznabi, I.; Bernstein, G.; Bhambhani, P.; Lin, T.-Y.; Desmet, P.; Dokter, A. M.; Horton, K. G.; Nilsson, C.; Van Doren, B. M.; Farnsworth, A.; La Sorte, F. A.; Maji, S.
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The US NEXRAD radar network has monitored the aerosphere over the US and its territories continuously since the 1990s and archived nearly 300 million radar volume scans. These data contain a wealth of information about the movements of birds, bats, and insects. Historically, this biological information was difficult to access due to the amount of data and challenges in analyzing it. In the last 15 years, fueled by computational and methodological advances, large-scale aeroecology research has blossomed. However, comprehensive analyses of the NEXRAD archive remain very costly. We collected measurements of biological activity from every volume scan in the NEXRAD archive--nearly 300 million data files total--to assemble a dataset of aerial biomass over the US from 1995 to 2025. The core data are vertical profiles, which summarize biological activity at different heights above the radar station for each volume scan. We also provide time series data products that aggregate vertical profiles to point measurements at radar stations across time. These data products can support a range of aeroecology analyses at significantly reduced effort.
Hohmann, N.; Bickerton, S.; Jansen, A.; Liu, X.; Jarochowska, E.
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Stratigraphic paleobiology is a newly established interdisciplinary approach, which has demonstrated that the fossil record is a joint expression of biotic and stratigraphic change, and all inferences from it must be grounded in a solid understanding of the stratigraphic context. Fossiliferous strata can be found in all depositional systems (e.g., marine, terrestrial, or lacustrine; siliciclastics or carbonates), each having a unique characteristic timescale and set of external controls, which govern the accumulation of sedimentary particles, including fossils. Consequently, the same biotic changes are preserved differently across depositional systems. While carbonate systems form a large portion of the fossil record, most studies in stratigraphic paleobiology have focused on siliciclastic systems and are not easily generalizable. As they are predominantly formed by living organisms, carbonates are both fossils and record, opening the opportunity to study the co-dependency of life and its environment. Here, we explore the stratigraphic paleobiology of carbonate systems by combining simulations of carbonate platform and ramp geometries with synthetic fossil records. We explore the preservation of extinction patterns and rates spatially and across geometries. By examining stratigraphic biases in isolation (unconformity and condensation, ecology, and abundance biases), we find characteristic differences between ramp and platform geometries due to their differential response to sea level change, spatial variability, and differences in ecological clines. Differences in the structure of the fossil record between platform geometries are traceable to the contribution and properties of the carbonate producing organisms (carbonate factories), showing that preservation of earth system data in carbonate systems will vary both latitudinally and temporally or as a result of major perturbations of the biogeosphere. Our results show that while general rules on the structure of the fossil record can be derived for entire depositional systems, accounting for the geological and ecological dynamics of a particular sedimentary basin can hugely refine interpretations of the fossil record. That is particularly true for biogenic and biologically-mediated sediments.
McInnes, J. C.; Burgess, T.; Mergard, G.; Wells, M. R.; McMahon, C. R.; Neave, M. J.; Polanowski, A.; Terauds, A.; Tornos, J.; Lejeune, M.; Briand, F.-X.; Baele, G.; Boulinier, T.; Achurch, H.; Alderman, R.; Lashko, A.; Wienecke, B.; Wynen, L. P.; Viola, B.; Virtue, P.; Hodgson, J. C.
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High pathogenicity avian influenza (HPAI) has spread across the sub-Antarctic, causing significant wildlife impacts. We report its first detection in an Australian external territory, Heard Island and McDonald Islands, which supports over one million breeding seabirds and seals. Drone and ground surveys (October 2025, January 2026), combined with viral genome analysis, confirmed infection with Influenza A H5N1 clade 2.3.4.4b at Heard Island. Drone surveys revealed mass mortality in southern elephant seals, with 8,573 pups (62%) recorded dead across Heard Island by the final surveys. Mortality increased at an average rate of 5.6% per day in a subset of harems, and the highest observed mortality in a harem was 97%. Based on the average (76%) mortality in the final surveys, total estimated pup mortality at Heard Island was 13,359 (from a total population of 17,364 pups), though this may be an underestimate as mortality was ongoing at this time. HPAI was detected in six of nine species tested and, we suspect, led to elevated mortality in king and gentoo penguins. Phylogenetic analysis indicates the virus was introduced from Crozet Islands, with an estimated arrival around August 2025. These data show the continued easterly spread of HPAI around the sub-Antarctic, with severe but heterogeneous impacts across taxa. Our results demonstrate the value of drones for large-scale monitoring, underscoring the need for continued and enhanced HPAI surveillance across the Southern Ocean.
Hellige, I.; Buck-Wiese, H.; Bligh, M.; Thomson, T.; White, L.; Arnosti, C.; Baiko, D.; Biehler, L.; Fernandez-Mendez, M.; Ghobrial, S.; Gu, B.; Gustafsson, C.; Kajee, M.; Lloyd, C. C.; Nguyen, N. P.; Philippi, M.; Potin, D.; Potin, P.; Rothman, M.; S. Murillo, B.; Seidel, M.; Uth, C.; Wieters, E.; Magnusson, M.; Hehemann, J.-H.
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Macroalgae secrete complex carbohydrate polymers, their extracellular matrix, as protection against microbial degradation. By resisting breakdown, these carbohydrates can contribute to marine carbon sequestration, though mechanisms, extent, and timescales remain unknown. Using ship-based sampling and experiments, we found that brown macroalgae release 1.7-4.2% of carbon fixation as fucoidan, equivalent to 0.32-0.88 mg fucoidan per gram of dry seaweed tissue per day. A Bayesian model trained on our empirical data, coupled with Monte Carlo simulations suggests an annual global release of 13-37 megatons fucoidan carbon. Moreover, degradation resistance combined with surface-activity enabled fucoidan to act as glue that cross-linked allochthonous organic carbon including microbes and proteins into marine snow. Notably, substantial fucoidan exudation was universally conserved across all tested species and regions. Thus, any brown macroalgal species can be used e.g. via aquafarming to enhance the formation of marine snow.
Terzin, M.; Robbins, S. J.; Le Cao, K.-A.; Bell, S. C.; Dougan, K. E.; Zaugg, J.; Gruber, R. K.; Emslie, M. J.; Ceccarelli, D. M.; Chaffron, S.; Hugenholtz, P.; Webster, N. S.; Bourne, D. G.; Yeoh, Y. K.; Laffy, P. W.
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Australias Great Barrier Reef is a biodiversity hotspot critical to ocean health, yet it faces increasing threats from climate change and localised impacts requiring effective conservation and management action. Rezoning of the Great Barrier Reef Marine Park in 2004 expanded No-Take Marine Reserves (NTMRs) to restrict extractive activities like fishing and collecting, creating one of the largest networks of marine reserves globally. Benefits like increased biomass of fisheries-targeted species and improved coral community health metrics have been reported, though the effects of zoning on water chemistry and seawater microbiology remain unexplored. Using data from the Great Barrier Reef Microbial Genomics Database, we investigated the structure of seawater microbiomes on 48 offshore reefs within NTMRs and fished reefs. A supervised classification method (MINT sPLS-DA) identified 350 indicator species that predict zoning with [~]71% accuracy (range 58-85%). Microbial communities broadly reflected reef states, with NTMR zones enriched in streamlined microbial oligotrophs (Pelagibacter and SAR86) correlating with higher cover of hard coral, crustose coralline algae, and herbivore fish abundance under lower nutrient conditions. By contrast, fished reefs harbored opportunists (Flavobacteriales, especially UA16, and Pseudomonadales) associating with elevated nutrients and turf algae cover. Co-occurrence networks revealed stronger competitive interactions in fished reefs, where nutrient-responsive taxa may outcompete other microbes, underscoring the need to investigate how these shifts influence reef nutrient cycling and function. Our findings reveal ecosystem-wide effects of marine zoning beyond fish protection, with distinct seawater microbiomes between fished reefs and NTMRs, which will help build decision tools for more targeted reef health monitoring assessments.
Slimp, M.; Martinez, L. N.; Kapp, J. D.; Kirby, M. E.; MacDonald, G.; Hankins, D. L.; Melrose, S.; Johnson, M. G.; Shapiro, B.; Meyer, R. S.
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As we face the sixth mass extinction, understanding how ecosystems have persisted--or collapsed--through millennia of changing climates and human activity is critical for preventing biodiversity loss. We bolstered the past 24,000 years of plant and mammal records using targeted capture of ancient sedimentary DNA (sedaDNA) from Southern Californias Lake Elsinore, a cultural center for the Payomkawichum (Luiseno), Cahuilla, and other Peoples. Our sedaDNA approach generated a diverse dataset that included 18 plant orders not previously documented from Lake Elsinore. We paired these records with local measurements and paleo evidence of fire regimes, climate, demographic history, and ethnobotanical knowledge. We find that ecological stability persisted for 10,000 years of continuous human presence, reflecting ecosystem resilience through major climatic shifts, altered fire regimes, and varying intensities of Indigenous land use. SedaDNA revealed increased availability of food, medicinal, and utilitarian plant taxa during this period of botanical stability, shedding light on ancient fire-environment-human interactions that can inform contemporary management strategies.
Frisoni, F.; Carrard, T.; U. Gruebler, M.; S. Hatzl, J.; Safi, K.; A. Sprenger, M.; Sumasgutner, P.; Wikelski, M.; Scacco, M.
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Understanding how animals respond to their physical environment requires environmental observations at the scale at which behavioural decisions are made. For soaring birds, the coarse resolution of weather products has long hindered the analysis of their behavioural response to fine-scale atmospheric dynamics, forcing uplift sources to be inferred largely from behaviour itself. Here, we combined high-resolution movement data from 24 golden eagles with the kilometre-scale COSMO weather model. We first classified thermal, orographic, and gravity-wave uplifts using independent atmospheric predictors and then quantified the birds' use of each uplift type and their fine-scale behavioural responses. Eagles relied predominantly on thermals, but opportunistically adjusted their use of uplift sources seasonally. The birds' flight behaviour could not reliably indicate which uplift type was primarily used, and thus suggests that both atmospheric processes and behavioural responses are better described as continua than discrete categories. Finally, we compared vertical wind velocities derived from eagles soaring behaviour with those modelled by the COSMO weather model, showing that most of the thermals exploited by eagles remain unresolved at kilometre-scale model resolution. Our results demonstrate how high-resolution weather models provide new insights into bird movement decisions, while also highlighting the potential of soaring birds as biologically embedded atmospheric sensors that could help closing the resolution gap in atmospheric models.
Wang, H.; Ai, C.; Barcan, A. S.; Li, Z.; Zhao, B.; He, Y.; Wang, Y.
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The Eboliang Hu saline lakes in the hyper-arid Qaidam Basin is a high-altitude, weakly acidic hypersaline system with strong environmental gradients and limited nitrogen availability. To resolve its microbial ecology and evolutionary context, we performed genome-resolved metagenomic sequencing across four distinct habitats, reconstructing 46 medium- to high-quality metagenome-assembled genomes (MAGs) and a comprehensive gene catalog. The community shows pronounced spatial heterogeneity and is dominated by Thermodesulfobacteriota, Pseudomonadota, Bacteroidota, and archaeal lineages. Phylogenomic placement and large-scale sequence comparisons indicate that multiple dominant taxa exhibit affinity to marine- and subsurface-associated reference lineages, consistent with long-term isolation of a marine-derived ecosystem about 10-11 million years ago. Functional reconstruction reveals a distributed metabolic system in which carbon, nitrogen, and sulfur cycling are partitioned across taxa. Notably, hydrogen oxidation and arsenite oxidation are recurrent energy-producing strategies across dominant lineages, indicating redox flexibility under oligotrophic conditions. Comparative genomics further suggests lineage-specific adaptations to osmotic stress, UV exposure, and nutrient limitation. Horizontal gene transfer and phylogenetic incongruence among key metabolic genes indicate that co-evolutionary processes and gene exchange have contributed to functional innovation. These findings provide a framework for understanding microbial persistence and evolution in isolated extreme environments and offer potential analogs for extraterrestrial habitability.
Thome, P. C.; Oldenburg, E.; Hörstmann, C.; Strassert, J. F.
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Chytrids are unicellular fungi that infect and degrade phytoplankton as parasites or saprotrophs. They impact not only food availability and quality in surface waters but also carbon cycling and sequestration. So far, their ecological significance has mostly been investigated for freshwater environments, whereas observations for marine environments are scarce -- even though chytrids can be highly abundant there, too (as shown for the Arctic Ocean). To test the chytrids' potential to control phytoplankton dynamics in the Arctic Ocean, we analysed metabarcoding and photosynthetic pigment data from two expeditions, Tara Polar Circle and MOSAiC; the latter providing a dense sampling transect across one year from the under-ice water column and sea ice samples. The phytoplankton communities of both environments were dominated by diatoms, with strong seasonal effects indicating blooms in the water column. Chytrids dominated fungal communities in both environments and revealed a strong cryo-pelagic coupling. They were especially abundant during the sea ice melt in water samples and in ice-associated (sympagic) samples, where they represented >2% and up to 61%, respectively, of all combined reads assigned to chytrids or phytoplankton. Co-occurrences of the two most abundant chytrid taxa with some of the most abundant diatom taxa and niche differentiation from other potential diatom parasites are consistent with the chytrids' critical role in controlling diatom blooms, especially in sympagic habitats.
Zhang, Y.; Ma, X.; Luo, K.; Liu, X.; Cao, C.
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A direct empirical relationship between gross primary productivity (GPP) estimated by the eddy covariance method and satellite vegetation indices (VIs) has been widely observed across diverse ecosystems globally. Building on this observed covariation, VIs are frequently utilized as critical parameters - such as the fraction of absorbed photosynthetically active radiation (fPAR) - within light use efficiency (LUE) and greenness-based models for carbon cycle monitoring. However, actual canopy carbon assimilation is jointly governed by slowly evolving structural parameters and highly dynamic functional traits, such as physiological efficiency. The extent to which the macro-scale VI-GPP covariance is driven by structural scaffolding, and how this structural signal decouples from physiological function under environmental stress, remains to be systematically quantified. Here, we synthesized half-hourly eddy covariance measurements from 328 globally distributed sites and paired them with a rigorously angle-normalized Enhanced Vegetation Index (nadir view and fixed solar zenith angle at 30 degrees, EVI_SZA30). By applying a nonlinear light-response curve model across 54,720 high-frequency temporal windows, we mechanistically disentangled observed actual GPP (GPP_EC) into baseline photosynthetic capacity (P_c) and intrinsic quantum yield (alpha). Our results demonstrate that the macroscopic covariance between EVI_SZA30 and GPP_EC (R^2=0.554) is primarily driven by the index's robust ability to track structural capacity (P_c, R^2=0.538). In contrast, EVI_SZA30 exhibits limited sensitivity to high-frequency variations in functional traits like physiological efficiency (alpha, R^2=0.038). Particularly in water-limited biomes (e.g., open shrublands and woody savannas), intense environmental stress triggers rapid stomatal regulation while the physical canopy structure remains relatively stable. Consequently, the correlation between EVI and P_c becomes notably stronger than its correlation with actual GPP_EC, highlighting a pronounced structural-physiological decoupling. Because discrete overpasses by sun-synchronous polar-orbiting satellites face intrinsic temporal constraints in capturing sub-daily physiological down-regulation (e.g., midday photosynthetic depression), future monitoring paradigms could greatly benefit from the continuous, high-frequency observations provided by next-generation geostationary (GEO) satellites to bridge the gap between structural parameters and transient ecosystem function.
Mahnert, A.; Medicus, T.; Kumpitsch, C.; Moissl-Eichinger, C.; Carter, J.; Sephton, M. A.; Sinibaldi, S.; Rettberg, P.
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Current planetary protection approaches rely heavily on spore-based tests developed for Mars missions and may not adequately assess contamination risks for icy ocean worlds such as Europa. We developed a genome-based framework combining deep shotgun metagenomics and supervised machine learning to predict survival-relevant microbial traits in ESA JUICE launch-site cleanrooms. From 183 genome bins, 25 representative genomes were analyzed for traits including cryotolerance, desiccation tolerance, salt resilience, anaerobic metabolism, autotrophy, and sporulation. Several skin-associated microbes carried multiple relevant traits, and some appeared actively replicating. A broader meta-analysis of 1,868 genomes showed that trait profiles vary strongly within taxa, demonstrating that taxonomy alone is insufficient for risk assessment. This framework complements current planetary protection assays, helps to predict how microbes would survive in a new biotope, and supports functional, risk-informed contamination monitoring for future space missions.
Resco de Dios, V.; Cunill Camprubi, A.; Schutze, S.; Castedo-Dorado, F.; Picos, J.; Ramirez, J.; Domenech, R.; Bachfischer, M.; Castellnou, M.; Cardil, A.
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Southwestern Europe faced an extreme wildfire season in 2025, with nearly 700,000 hectares burned in the Iberian Peninsula (IP) alone. Here, we analyze the drivers and impacts of the 2025 wildfire season in the IP and its significance within the ongoing global pyrocrisis. Decades-long declines in burned area, driven by increased fire suppression, ceased after an inflection point in 2022. Fire intensity has escalated over the last two decades, and the energy emitted in 2025 approached that produced annually by a 1,000MW nuclear reactor. Despite a historically wet spring, an extreme summer heatwave triggered a flash drought, dehydrating fuels below critical thresholds. Remarkably, 29-42% of all wildfires spread faster at night than during the day, a seldom-reported phenomenon likely arising from interactions between surface weather, atmospheric instability, and pyroconvective processes. Global change-induced increases in fire intensity facilitated the overwhelming of suppression efforts during simultaneous fire events that may have been manageable decades ago. Fire activity expanded into previously fire-free high-altitude regions, and there was a marked change in fire-size distributions, with the largest wildfire in record and the largest proportion of burned area by megafires (those burning over 5,000ha). Impacts included over 2,000 premature deaths from smoke exposure and significant effects on protected areas. These results indicate shifts in key components of anthropogenic fire regimes, including unprecedented nocturnal fire acceleration and increased burned area and fire intensity, with escalating impacts on human health and ecosystems.
Lolos, I.; Abatzoglou, J. T.; Terry, T. J.
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Rainfall and vapor pressure deficit (VPD) are well-studied hydrological variables that largely determine aboveground net primary production (ANPP) in most ecosystems. Meanwhile, the impacts of another important part of the hydrologic cycle, non-rainfall water from fog and dew, remain poorly understood at the ecosystem level. To fill this gap, we used meteorological variables measured at weather stations along with satellite-derived vegetation greenness data from surrounding areas to examine how fog and dew frequency affect summer plant growth across the contiguous United States. Our analysis shows that, even after accounting for precipitation, VPD, and land-cover type, fog and, more so, dew enhanced vegetation productivity in water-limited regions. In contrast, non-rainfall water had a neutral or negative impact on plant growth in humid regions, with fog showing the strongest and most widespread negative effects. Taken together, our findings reveal that summertime non-rainfall water has differential effects on vegetation that are largely determined by ecosystem-level water availability. These aridity-dependent effects of fog and dew should be considered in future ecological and agricultural studies and in assessments of projected climate impacts on vegetation.
Yang, Y.; Brown, C. L.; Liu, L.; Sereika, M.; Jensen, T. B. N.; Albertsen, M.; Nielsen, P. H.; Singleton, C. M.
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Environmental resistome comprises diverse antibiotic resistance genes (ARGs) that can play critical roles in "One Health", facilitating the evolution, persistence, and dissemination of microbial resistances. Yet, knowledge gaps exist in resistome structures and ecological connectivity across various ecosystems at a national scale. Here, we combined nationwide extensive short- and long-read sequencing efforts for soils, sediments, waters and wastewater treatment plants across Denmark to resolve resistome composition, habitat specificity and connectivity. From over 7,000 sequenced environmental samples (24 Tb of metagenomic data) that were classified into 21 distinct habitat classifications, resistomes exhibited habitat-specific patterns. We identified core ARGs for establishing environmental baseline of ARGs, and habitat-associated indicator ARGs facilitating source tracking. Using 110 deep long-read metagenomes (9 Tb data), we showed that only a subset of cross-habitat commonly-abundant ARGs showed elevated associations with MGEs and broad host range, suggesting unequal resistome connectivity across ecosystems among environmental ARGs. Additionally, although natural habitats had much lower resistome relative abundance and transferability than human-associated habitats, some mobile environmental ARGs exhibited links to those in human pathogens. These findings establish an ecological framework for interpreting environmental resistomes and prioritizing ARGs for environmental surveillance in the One Health framework.
Telford, C.; Nyakarahuka, L.; Baluku, J.; Mutesi, J.; Song, C.; Boyce, R.; Emch, M.; Edwards, J.; Shoemaker, T.; Lessler, J.
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Rift Valley fever (RVF) is a mosquito-borne disease that can cause severe illness and death in both humans and livestock. Since 2016, Uganda has experienced recurrent but localized RVF outbreaks concentrated in the countrys southwestern region. The ecological drivers of this emergence remain unclear, as outbreaks have occurred throughout the year and show little association with meteorological patterns. We evaluated whether crop cultivation, particularly banana cultivation, is associated with RVF outbreak occurrence after controlling for likely confounders. We conducted a longitudinal study of human-inhabited 5 x 5 km grid cells across southwestern Uganda from 2016-2024. Annual Sentinel-2 satellite imagery composites were used to classify land cover into banana, coffee, ground crops, and non-crop categories, and the proportion of each land type was calculated for every grid-cell year. Because land cover proportions are compositional, isometric log-ratio transformations were used to estimate the independent effects of each land type. Confounding was addressed through propensity weighting, and crop substitution effects were estimated using g-computation. Banana land cover was the only land type consistently associated with increased RVF outbreak likelihood. In grid-cell years with low baseline banana cover, a 10-percentage point substitution from other land classes into banana was associated with a 1.64-fold increase in the odds of an RVF outbreak (95% CI: 1.17-2.29). In a simplified banana-only model, each 10-percentage point increase in banana cover was associated with a 1.21-fold increase in outbreak odds (95% CI: 1.02-1.43). Holding banana cover constant, substitutions among coffee, ground crop, and non-crop land showed weak or null associations. These findings suggest that banana cultivation may be an important ecological feature influencing RVF transmission dynamics and outbreak risk in southwestern Uganda. Author SummaryRift Valley fever (RVF) is a mosquito-borne disease that affects both humans and livestock and has caused repeated outbreaks in southwestern Uganda since 2016. While rainfall and flooding are often linked to RVF outbreaks elsewhere, Ugandas recent outbreaks have occurred across seasons and are not well explained by weather patterns alone. We investigated whether agricultural land use could help explain where outbreaks occur. Using satellite imagery from 2016-2024, we measured the amount of banana cultivation, coffee cultivation, ground crops, and non-crop land across southwestern Uganda and evaluated their association with RVF outbreak occurrence. We found that areas with greater banana cultivation were consistently more likely to experience RVF outbreaks, even after accounting for environmental and demographic factors. In contrast, coffee, ground crops, and non-crop land showed little evidence of an independent association with outbreak risk. These findings suggest that banana cultivation may create ecological conditions that favor RVF transmission. Rather than indicating that bananas themselves cause disease, the results point to banana-growing landscapes as potential environments where interactions among mosquitoes, livestock, and humans may increase transmission opportunities. Understanding these local ecological drivers could help improve surveillance, risk assessment, and prevention strategies for RVF in Uganda and other endemic regions.